Gibbons, F.D. and Roth F.P., (2002) Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation. Genome Research, vol. 12, pp1574-1581.You can download a copy of the perl code if you'd like, or just use this page to run it on our server.
This is not a new clustering algorithm. Rather, it is a way to judge the quality of data that have been clustered elsewhere. We do this by evaluating the mutual information between a gene's membership in a cluster, and the attributes it possesses, as annotated by the Saccharomyces Genome Database (SGD) You can upload several files of clustered data at once and compare them.
NOTE: In the five years since ClusterJudge was released, a number of developments have taken place which may impact how it performs on your data.
This page is maintained by Kenny Chua
at the Roth Lab
of Harvard Medical School.
Please address problems relating specifically to this page to
Kenny Chua.
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This file (/srv/www/llama.mshri.on.ca/cgi/ClusterJudge/cluster_judge.pl), last modified Friday13:11, 2 Oct 2020 by apache.
Copyright (c) 2001-2006 by Frank Gibbons
and the President and Fellows of Harvard University. All rights reserved.