Gibbons, F.D. and Roth F.P., (2002) Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation. Genome Research, vol. 12, pp1574-1581.You can download a copy of the perl code if you'd like, or just use this page to run it on our server.
This is not a new clustering algorithm. Rather, it is a way to judge the quality of data that have been clustered elsewhere. We do this by evaluating the mutual information between a gene's membership in a cluster, and the attributes it possesses, as annotated by the Saccharomyces Genome Database (SGD) You can upload several files of clustered data at once and compare them.NOTE: In the five years since ClusterJudge was released, a number of developments have taken place which may impact how it performs on your data.
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This file (/www/llama.mshri.on.ca/cgi/ClusterJudge/cluster_judge.pl), last modified Saturday11:59, 12 Mar 2011 by .
Copyright (c) 2001-2006 by Frank Gibbons and the President and Fellows of Harvard University. All rights reserved.